All functions

example_flocker_model_single

Example single-season flocker model

fitted_flocker()

Posterior predictive distributions for modeled probabilities

flock()

Fit an occupancy model

flocker_stancode()

Generate stan code for an occupancy model

flocker_standata()

Generate stan data for an occupancy model

get_Z()

Get posterior distribution of the Z matrix

get_flocker_prior()

Get prior for occupancy model

log1m_inv_logit()

Numerically stable log one-minus inverse logit

log_inv_logit()

Numerically stable log inverse logit

log_lik_flocker()

Compute unit-wise or series-wise log-likelihood matrix for a flocker_fit object

loo_compare_flocker()

LOO comparisons for flocker models.

loo_flocker()

Compute loo for flocker_fit objects

make_flocker_data()

Format data for occupancy model with flock().

make_flocker_data_augmented()

#' Format data for data-augmented occupancy model, to be passed to flock().

make_flocker_data_dynamic()

Format data for dynamic (multi-season) occupancy model, to be passed to flock().

make_flocker_data_static()

Format data for single-season occupancy model, to be passed to flock().

predict_flocker()

Get posterior predictions from a flocker model

simulate_flocker_data()

Simulate data for use with make_flocker_data() and downstream functions.